I am pleased to announce our
latest paper on agent-based modeling of ocean microbes. Microbe biogeography
studies typically assume that the microbes are affected only by local
conditions. However, in areas with substantial advection (e.g. ocean currents),
upstream conditions may play a stronger role in shaping the local community.
Here we explore this effect for temperature selection in surface ocean
microbes. We develop a novel agent-based model and perform simulations to
quantify the effect of advection at the global scale. Our results show that
advection by currents can change the effective selection temperature of
microbes by several degrees Celsius, and therefore should be considered in
microbe biogeography studies. We then apply our results to three global
datasets and for all we can better explain observations when currents are considered.
We make our results accessible to the broader community by providing an atlas
of temperature corrections.
I think this is an interesting
study with some important conclusions. In terms of my research program, this
model also represents a stepping stone for a more complex global microbe
agent-based model. Specifically, we are now working on integrating a gene-level
model of Synechococcus I developed previously (see link below) into this model.
We will then make predictions of gene, transcript and protein levels at the
global scale. Pretty exciting!
PAPER
YOUTUBE MOVIE
CODE AT GITHUB
SYNCHOCOCCUS MODEL PAPER
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